The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.

Prefix

planttfdb

Keywords

dna gene life science protein regulation rna small molecule

Links

Homepage

Contact

Ge Gao   0000-0001-6470-8815   gao-ge

Pattern for Local Unique Identifiers

Local identifiers in Plant Transcription Factor Database should match this regular expression:
^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$

Example Local Unique Identifier

Ath_AT1G01030.1   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Transcription Factor Database should match this regular expression:
^planttfdb:[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$

Example CURIE

planttfdb:Ath_AT1G01030.1

Publications

• 2016 PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
• 2015 An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
• 2013 PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Ath_AT1G01030.1 is used to demonstrate the providers available for Plant Transcription Factor Database. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.