The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).

biology gene rna
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in miRBase pre-miRNA should match this regular expression:

Example Local Unique Identifier
MI0026471   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from miRBase pre-miRNA should match this regular expression:

Example CURIE
Metaregistry miRBase pre-miRNA

The metaregistry provides mappings between the Bioregistry and other registries. There are 13 mappings to external registries for this resource with 7 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MIRBASE
Biolink Biolink Model Registry logo biolink mirbase
EDAM EDAM Ontology logo edam 2642
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.hmgte8
Integbio Integbio logo integbio nbdc00136 logo miriam mirbase
N2T Name-to-Thing logo n2t mirbase
NCBI National Center for Biotechnology Information Registry logo ncbi miRBase
Pathguide Pathguide logo pathguide 210
Prefix Commons Prefix Commons logo prefixcommons mirbase
re3data Registry of Research Data Repositories logo re3data r3d100010566
TogoID togoid Mirbase
Wikidata Wikidata Property logo wikidata P2870

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MI0026471 is used to demonstrate the providers available for miRBase pre-miRNA. A guide for curating additional providers can be found here.

Name Metaprefix URI
miRBase pre-miRNA mirbase
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF