The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).
- Prefix
mirbase- Keywords
- gene ontology rna sequence transcript
- License
- public domain
- Links
- Homepage OBO OWL OBO JSON
- Publications
- 2019 miRBase: from microRNA sequences to function
- 2013 miRBase: annotating high confidence microRNAs using deep sequencing data
- 2010 miRBase: integrating microRNA annotation and deep-sequencing data
- 2007 miRBase: tools for microRNA genomics
- 2006 miRBase: microRNA sequences, targets and gene nomenclature
- 2004 The microRNA Registry
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in miRBase pre-miRNA should match this regular expression:
^MI\d{7}$ - Example Local Unique Identifier
- MI0026471 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from miRBase pre-miRNA should match this regular expression:
^mirbase:MI\d{7}$ - Example CURIE
- mirbase:MI0026471
Contacts
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 12 mappings to external registries with 6 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
MIRBASE
|
|
Biolink
|
biolink |
mirbase
|
|
EDAM
|
edam |
2642
|
|
Integbio
|
integbio |
nbdc00136
|
|
Identifiers.org
|
miriam |
mirbase
|
|
N2T
|
n2t |
mirbase
|
|
NCBI
|
ncbi |
miRBase
|
|
Pathguide
|
pathguide |
210
|
|
Prefix Commons
|
prefixcommons |
mirbase
|
|
re3data
|
re3data |
r3d100010566
|
|
| TogoID | togoid |
Mirbase
|
|
Wikidata
|
wikidata |
P2870
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier MI0026471 is used to demonstrate the providers
available for miRBase pre-miRNA. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| miRBase pre-miRNA | mirbase |
http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0026471 |
| Bioregistry | bioregistry |
https://bioregistry.io/mirbase:MI0026471 |
| Identifiers.org | miriam |
https://identifiers.org/mirbase:MI0026471 |
| Name-to-Thing | n2t |
https://n2t.net/mirbase:MI0026471 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/mirbase:MI0026471 |