The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).

Prefix
mirbase
Keywords
biology gene rna
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in miRBase pre-miRNA should match this regular expression:
^MI\d{7}$

Example Local Unique Identifier
MI0026471   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from miRBase pre-miRNA should match this regular expression:
^mirbase:MI\d{7}$

Example CURIE
mirbase:MI0026471
Publications
Metaregistry miRBase pre-miRNA

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MIRBASE
Biolink Biolink Model Registry logo biolink mirbase
EDAM EDAM Ontology logo edam 2642
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.hmgte8
Identifiers.org Identifiers.org logo miriam mirbase
N2T Name-to-Thing logo n2t mirbase
NCBI National Center for Biotechnology Information Registry logo ncbi miRBase
Prefix Commons Prefix Commons logo prefixcommons mirbase
re3data Registry of Research Data Repositories logo re3data r3d100010566
Wikidata Wikidata Property logo wikidata P2870
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE None:MI0026471 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
miRBase pre-miRNA mirbase http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0026471
Bioregistry bioregistry https://bioregistry.io/mirbase:MI0026471
Identifiers.org miriam https://identifiers.org/mirbase:MI0026471
Name-to-Thing n2t https://n2t.net/mirbase:MI0026471
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/mirbase:MI0026471