appears_in: []
contact:
  email: sam.griffiths-jones@manchester.ac.uk
  github: samgriffithsjones
  name: Sam Griffiths-Jones
  orcid: 0000-0001-6043-807X
depends_on: []
deprecated: false
description: The miRBase Sequence Database is a searchable database of published miRNA
  sequences and annotation. The data were previously provided by the miRNA Registry.
  Each entry in the miRBase Sequence database represents a predicted hairpin portion
  of a miRNA transcript (termed mir in the database), with information on the location
  and sequence of the mature miRNA sequence (termed miR).
example: MI0026471
homepage: http://www.mirbase.org/
keywords:
- biology
- gene
- rna
mappings:
  biocontext: MIRBASE
  biolink: mirbase
  edam: '2642'
  fairsharing: FAIRsharing.hmgte8
  integbio: nbdc00136
  miriam: mirbase
  n2t: mirbase
  ncbi: miRBase
  pathguide: '210'
  prefixcommons: mirbase
  re3data: r3d100010566
  togoid: Mirbase
  wikidata: P2870
name: miRBase pre-miRNA
namespace_in_lui: false
pattern: ^MI\d{7}$
preferred_prefix: mirbase
prefix: mirbase
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/mirbase:$1
publications:
- doi: 10.1093/nar/gky1141
  pmc: PMC6323917
  pubmed: '30423142'
  title: 'miRBase: from microRNA sequences to function'
  year: 2019
- doi: 10.1093/nar/gkt1181
  pmc: PMC3965103
  pubmed: '24275495'
  title: 'miRBase: annotating high confidence microRNAs using deep sequencing data'
  year: 2013
- doi: 10.1093/nar/gkq1027
  pmc: PMC3013655
  pubmed: '21037258'
  title: 'miRBase: integrating microRNA annotation and deep-sequencing data'
  year: 2010
- doi: 10.1093/nar/gkm952
  pmc: PMC2238936
  pubmed: '17991681'
  title: 'miRBase: tools for microRNA genomics'
  year: 2007
- doi: 10.1093/nar/gkj112
  pmc: PMC1347474
  pubmed: '16381832'
  title: 'miRBase: microRNA sequences, targets and gene nomenclature'
  year: 2006
- doi: 10.1093/nar/gkh023
  pmc: PMC308757
  pubmed: '14681370'
  title: The microRNA Registry
  year: 2004
synonyms: []
uri_format: http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1
