{"prefix":"mirbase","name":"miRBase pre-miRNA","description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).","pattern":"^MI\\d{7}$","uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/mirbase:$1"}],"homepage":"http://www.mirbase.org/","contact":{"name":"Sam Griffiths-Jones","orcid":"0000-0001-6043-807X","email":"sam.griffiths-jones@manchester.ac.uk","github":"samgriffithsjones"},"example":"MI0026471","example_extras":[],"license":"public domain","download_owl":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.owl","download_obo":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.obo","download_json":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.json","deprecated":false,"mappings":{"biocontext":"MIRBASE","biolink":"mirbase","edam":"2642","integbio":"nbdc00136","miriam":"mirbase","n2t":"mirbase","ncbi":"miRBase","pathguide":"210","prefixcommons":"mirbase","re3data":"r3d100010566","togoid":"Mirbase","wikidata":"P2870"},"synonyms":[],"keywords":["gene","ontology","rna","sequence","transcript"],"publications":[{"pubmed":"30423142","doi":"10.1093/nar/gky1141","pmc":"PMC6323917","title":"miRBase: from microRNA sequences to function","year":2019},{"pubmed":"24275495","doi":"10.1093/nar/gkt1181","pmc":"PMC3965103","title":"miRBase: annotating high confidence microRNAs using deep sequencing data","year":2013},{"pubmed":"21037258","doi":"10.1093/nar/gkq1027","pmc":"PMC3013655","title":"miRBase: integrating microRNA annotation and deep-sequencing data","year":2010},{"pubmed":"17991681","doi":"10.1093/nar/gkm952","pmc":"PMC2238936","title":"miRBase: tools for microRNA genomics","year":2007},{"pubmed":"16381832","doi":"10.1093/nar/gkj112","pmc":"PMC1347474","title":"miRBase: microRNA sequences, targets and gene nomenclature","year":2006},{"pubmed":"14681370","doi":"10.1093/nar/gkh023","pmc":"PMC308757","title":"The microRNA Registry","year":2004}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"mirbase","logo":"https://www.mirbase.org/static/images/mirbase-logo_new.png"}