HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.

Prefix

hovergen

Keywords

dna gene genome/gene protein sequence taxonomy

License

http://pbil.univ-lyon1.fr/databases/hovergen.php

Links

Homepage

Publications

https://bioregistry.io/pubmed:8036164

2005 Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases

Pattern for Local Unique Identifiers

Local identifiers in Homologous Vertebrate Genes Database should match this regular expression:
^HBG\d+$

Example Local Unique Identifier

HBG004341   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Homologous Vertebrate Genes Database should match this regular expression:
^hovergen:HBG\d+$

Example CURIE

hovergen:HBG004341

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier HBG004341 is used to demonstrate the providers available for Homologous Vertebrate Genes Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.