appears_in: []
contact:
  email: david.wishart@ualberta.ca
  github: DavidWishartLab
  name: David S. Wishart
  orcid: 0000-0002-3207-2434
depends_on: []
deprecated: false
description: The Human Metabolome Database (HMDB) is a database containing detailed
  information about small molecule metabolites found in the human body.It contains
  or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
example: HMDB00001
example_extras: []
homepage: http://www.hmdb.ca/
keywords:
- chemical
- classification
- compound
- health/disease
- human
- interaction/pathway
- metabolite
- protein
- rna
- sequence
logo: https://www.hmdb.ca/assets/hmdb_logo-f7bd764aa882bbbb2cfb8930f5f784e60576755c3de62a23a6d99c845cbff7e3.png
mappings:
  biocontext: HMDB
  cheminf: 000408
  edam: '2622'
  integbio: nbdc00909
  miriam: hmdb
  n2t: hmdb
  pathguide: '244'
  prefixcommons: hmdb
  re3data: r3d100011285
  togoid: Hmdb
  wikidata: P2057
name: Human Metabolome Database
namespace_in_lui: false
pattern: ^HMDB\d+$
preferred_prefix: hmdb
prefix: hmdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/hmdb:$1
publications:
- doi: 10.1093/nar/gkab1062
  pmc: PMC8728138
  pubmed: '34986597'
  title: 'HMDB 5.0: the Human Metabolome Database for 2022'
  year: 2022
- doi: 10.1093/nar/gkx1089
  pmc: PMC5753273
  pubmed: '29140435'
  title: 'HMDB 4.0: the human metabolome database for 2018'
  year: 2018
- doi: 10.1093/nar/gks1065
  pmc: PMC3531200
  pubmed: '23161693'
  title: HMDB 3.0--The Human Metabolome Database in 2013
  year: 2012
- pubmed: '18953024'
- doi: 10.1093/nar/gkl923
  pmc: PMC1899095
  pubmed: '17202168'
  title: 'HMDB: the Human Metabolome Database'
  year: 2007
synonyms:
- HMDB
uri_format: http://www.hmdb.ca/metabolites/$1
