The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.

bioinformatics proteomics
Homepage @GPMDB
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Global Proteome Machine Database should match this regular expression:

Example Local Unique Identifier
GPM32310002988   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match this regular expression:

Example CURIE
2004 Open source system for analyzing, validating, and storing protein identification data
Metaregistry Global Proteome Machine Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GPMDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.fhcmwq logo miriam gpmdb
N2T Name-to-Thing logo n2t gpmdb

Providers are various services that resolve CURIEs to URLs. The example CURIE None:GPM32310002988 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Global Proteome Machine Database gpmdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
omicsdi GPMDB through OmicsDI