The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.
gpmdb
Local identifiers in Global Proteome Machine Database should match this
regular expression:
^GPM\d+$
Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match
this regular expression:
^gpmdb:GPM\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
4 mappings to external registries for gpmdb
with
2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
GPMDB
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.fhcmwq
|
|
Identifiers.org
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miriam |
gpmdb
|
|
Name-to-Thing
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n2t |
gpmdb
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
gpmdb:GPM32310002988
is used to demonstrate the provides available for
gpmdb
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
omicsdi |
GPMDB through OmicsDI | https://www.omicsdi.org/dataset/gpmdb/GPM32310002988 |