The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.

Prefix

gpmdb

Keywords

bioinformatics proteomics

Links

Homepage @GPMDB

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Global Proteome Machine Database should match this regular expression:
^GPM\d+$

Example Local Unique Identifier

GPM32310002988   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match this regular expression:
^gpmdb:GPM\d+$

Example CURIE

gpmdb:GPM32310002988

Publications

2004 Open source system for analyzing, validating, and storing protein identification data.

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for gpmdb with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE gpmdb:GPM32310002988 is used to demonstrate the provides available for gpmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.