The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.

bioinformatics proteomics
Ronald C. Beavis (Ron Beavis)   0000-0001-5782-1000   RonBeavis
Pattern for Local Unique Identifiers

Local identifiers in Global Proteome Machine Database should match this regular expression:

Example Local Unique Identifier
GPM32310002988   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match this regular expression:

Example CURIE
2004 Open source system for analyzing, validating, and storing protein identification data
Metaregistry Global Proteome Machine Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GPMDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.fhcmwq logo miriam gpmdb
N2T Name-to-Thing logo n2t gpmdb

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GPM32310002988 is used to demonstrate the providers available for Global Proteome Machine Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Global Proteome Machine Database gpmdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
omicsdi GPMDB through OmicsDI