GPM #:  
Keyword:  
1 match for GPM32310002988,
   | model | metadata | group | peptide | aaa | gel | GO | path | snaps | mh | ζ
BRENDA cell culture: none
BRENDA tissue: none
CELL cell type: none
GO subcellular: none
email: gert.lubec@meduniwien.ac.at
institution: Department of Pediatrics, Medical University of Vienna, Vienna, Austria
name: Heo S, et al.
project: Gel-based mass spectrometric analysis of hippocampal transmembrane proteins using high resolution LTQ Orbitrap Velos Pro.
project comment: Data from ProteomeXchange, PXD000311. Enzyme: trypsin, file: F017572.dat-ACA-SDS_T3.mzml. Published as part of Proteomics. 2014 Jul 10 (PubMed ). From the Abstract: ... Proteins were extracted from pooled whole mouse brains, enriched membrane fractions were prepared using either two commercially available kits or 6-aminocaproic acid under denaturing or native conditions followed by gel-based proteomic approaches using blue native (BN-) and SDS-PAGE with subsequent in-gel digestion with several proteases, chymotrypsin, trypsin followed by nano-LC-ESI-MS/MS analysis on LTQ Orbitrap Velos Pro ...

      Best models for GPM32310002988 , or display as
# log(e) accession coverage
1. -613.8 Tuba1b
2. -612.2 Tuba1a
3. -597.5 Atp5a1
4. -544.8 Atp5a1
5. -517.9 Tubb4a
6. -508.8 Tuba4a
7. -498.3 Tubb2a
8. -492.6 Tubb4b
9. -467.1 Tubb3
10. -461.6 Tubb5
11. -448.9 Atp6v1b2
12. -433.8 Atp5b
13. -406.2 Tuba3b
14. -389.2 Glud1
15. -387.2 Dld
16. -326.4 Tubb6
17. -316.9 Oxct1
18. -284.7 Cap1
19. -265.3 Tuba8
20. -262.3 Gk

     

Notes:
  1. Each of the diagrams indicates the patterns of peptides observed for proteins in a particular set of protein observations, identified by its GPM accession number. These patterns of experimentally determined peptides are commonly referred to as "protein sequence coverage" displays.
  2. The diagram elements are as follows:
    • black line: indicates the full length of the protein (all sequences are the same length in this display)
    • red bars: indicate observed peptides (the darker the red, the more confident the observations); and
    • green bars: indicate regions of the protein that may be difficult to observe, using standard proteomics techniques;
    • [X/Y]: the rank of a particular observation, with respect to all of the data in GPMDB.
      e.g., [3/10] means that this would be the 3rd best observation of this protein, out of 10 total observations.
  3. Clicking on the links to the left of the diagrams take you to a full display of the peptides and protein sequence information for that protein.








dblist_gpmnum.pl, v. 2018.11.24