The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.
- Prefix
gpmdb- Keywords
- bioinformatics proteomics
- Links
- Homepage
- Contact
- Ronald C. Beavis (Ron Beavis) 0000-0001-5782-1000 RonBeavis
- Pattern for Local Unique Identifiers
-
Local identifiers in Global Proteome Machine Database should match this regular expression:
^GPM\d+$ - Example Local Unique Identifier
- GPM32310002988 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match this regular expression:
^gpmdb:GPM\d+$ - Example CURIE
- gpmdb:GPM32310002988
- Publications
- 2004 Open source system for analyzing, validating, and storing protein identification data
Metaregistry Global Proteome Machine Database
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GPMDB
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.fhcmwq
|
|
Identifiers.org
|
miriam |
gpmdb
|
|
N2T
|
n2t |
gpmdb
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier GPM32310002988 is used to demonstrate the providers
available for Global Proteome Machine Database. A guide for curating additional providers can be found
here.
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
omicsdi |
GPMDB through OmicsDI | https://www.omicsdi.org/dataset/gpmdb/GPM32310002988 |