Registry EchoBASE post-genomic database for Escherichia coli
EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.
- Prefix
echobase- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^EB\d+$ - Example Local Unique Identifier
- EB0170 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^echobase:EB\d+$ - Example CURIE
- echobase:EB0170
- Publications
- 2005 EchoBASE: an integrated post-genomic database for Escherichia coli.
Metaregistry EchoBASE post-genomic database for Escherichia coli
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for echobase with
2 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
ECHOBASE
|
| Gene Ontology Registry | go |
EchoBASE
|
Identifiers.org
|
miriam |
echobase
|
Name-to-Thing
|
n2t |
echobase
|
| Prefix Commons | prefixcommons |
echobase
|
| Registry of Research Data Repositories | re3data |
r3d100011646
|
| UniProt Cross-ref database | uniprot |
EchoBASE
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
echobase:EB0170
is used to demonstrate the provides available for
echobase. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.