Registry EchoBASE post-genomic database for Escherichia coli

EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.

Prefix
echobase
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^EB\d+$

Example Local Unique Identifier
EB0170   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^echobase:EB\d+$

Example CURIE
echobase:EB0170
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for echobase.

Registry Name Metaprefix External Prefix
Gene Ontology Registry go EchoBASE
Identifiers.org miriam echobase
Name-to-Thing n2t echobase
Prefix Commons prefixcommons ECHOBASE
UniProt Cross-ref database uniprot EchoBASE
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE echobase:EB0170 is used to demonstrate the provides available for echobase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
EchoBASE post-genomic database for Escherichia coli echobase http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0170
Bioregistry bioregistry https://bioregistry.io/echobase:EB0170
Identifiers.org miriam https://identifiers.org/echobase:EB0170
Name-to-Thing n2t https://n2t.net/echobase:EB0170