EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.

Prefix

echobase

Keywords

gene gene expression

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^EB\d+$

Example Local Unique Identifier

EB0170   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^echobase:EB\d+$

Example CURIE

echobase:EB0170

Publications

2005 EchoBASE: an integrated post-genomic database for Escherichia coli.

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for echobase with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE echobase:EB0170 is used to demonstrate the provides available for echobase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.