EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.

Prefix

echobase

Keywords

gene gene expression

Links

Homepage

Contact

Gavin H. Thomas   0000-0002-9763-1313   ghthomas

Pattern for Local Unique Identifiers

Local identifiers in EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^EB\d+$

Example Local Unique Identifier

EB0170   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^echobase:EB\d+$

Example CURIE

echobase:EB0170

Publications

2005 EchoBASE: an integrated post-genomic database for Escherichia coli

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier EB0170 is used to demonstrate the providers available for EchoBASE post-genomic database for Escherichia coli. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.