The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
dbsnp
Local identifiers in NCBI dbSNP should match this
regular expression:
^rs\d+$
Compact URIs (CURIEs) constructed from NCBI dbSNP should match
this regular expression:
^dbsnp:rs\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for dbsnp
.
Registry Name | Metaprefix | External Prefix |
---|---|---|
Cellosaurus Registry | cellosaurus |
dbSNP
|
FAIRSharing
|
fairsharing |
FAIRsharing.edxb58
|
Gene Ontology Registry | go |
dbSNP
|
Identifiers.org
![]() |
miriam |
dbsnp
|
Name-to-Thing
![]() |
n2t |
dbsnp
|
National Center for Biotechnology Information Registry | ncbi |
dbSNP
|
Prefix Commons | prefixcommons |
dbSNP
|
UniProt Cross-ref database | uniprot |
dbSNP
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbsnp:rs121909098
is used to demonstrate the provides available for
dbsnp
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
NCBI dbSNP | dbsnp |
https://www.ncbi.nlm.nih.gov/snp/rs121909098 |
Bioregistry | bioregistry |
https://bioregistry.io/dbsnp:rs121909098 |
Identifiers.org | miriam |
https://identifiers.org/dbsnp:rs121909098 |
Name-to-Thing | n2t |
https://n2t.net/dbsnp:rs121909098 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
sib | SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |