The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
dbsnp
Local identifiers in dbSNP Reference SNP number should match this
regular expression:
^rs\d+$
Compact URIs (CURIEs) constructed from dbSNP Reference SNP number should match
this regular expression:
^dbsnp:rs\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
13 mappings to external registries for dbsnp
with
7 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
dbSNP
|
|
Cellosaurus Registry | cellosaurus |
dbSNP
|
|
EDAM Ontology | edam |
1106
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.edxb58
|
|
Gene Ontology Registry | go |
dbSNP
|
|
HL7 External Code Systems | hl7 |
2.16.840.1.113883.6.284
|
|
Identifiers.org
![]() |
miriam |
dbsnp
|
|
Name-to-Thing
![]() |
n2t |
dbsnp
|
|
National Center for Biotechnology Information Registry | ncbi |
dbSNP
|
|
Prefix Commons | prefixcommons |
dbsnp
|
|
Registry of Research Data Repositories | re3data |
r3d100010652
|
|
UniProt Cross-ref database | uniprot |
DB-0013
|
|
Wikidata Property
|
wikidata |
P6861
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbsnp:rs121909098
is used to demonstrate the provides available for
dbsnp
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
sib |
SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |