Registry NCBI dbSNP
The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
- Prefix
dbsnp- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in NCBI dbSNP should match this regular expression:
^rs\d+$ - Example Local Unique Identifier
- rs121909098 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from NCBI dbSNP should match this regular expression:
^dbsnp:rs\d+$ - Example CURIE
- dbsnp:rs121909098
- Publications
- 2001 dbSNP: the NCBI database of genetic variation.
Metaregistry NCBI dbSNP
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for dbsnp with
5 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
dbSNP
|
| Cellosaurus Registry | cellosaurus |
dbSNP
|
| EDAM Ontology | edam |
1106
|
FAIRSharing
|
fairsharing |
FAIRsharing.edxb58
|
| Gene Ontology Registry | go |
dbSNP
|
| HL7 External Code Systems | hl7 |
2.16.840.1.113883.6.284
|
Identifiers.org
|
miriam |
dbsnp
|
Name-to-Thing
|
n2t |
dbsnp
|
| National Center for Biotechnology Information Registry | ncbi |
dbSNP
|
| Prefix Commons | prefixcommons |
dbsnp
|
| Registry of Research Data Repositories | re3data |
r3d100010652
|
| UniProt Cross-ref database | uniprot |
dbSNP
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbsnp:rs121909098
is used to demonstrate the provides available for
dbsnp. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
sib |
SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |