The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
dbsnp
Local identifiers in dbSNP Reference SNP number should match this
regular expression:
^rs\d+$
Compact URIs (CURIEs) constructed from dbSNP Reference SNP number should match
this regular expression:
^dbsnp:rs\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 13 mappings to external registries for this resource with 7 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
dbSNP
|
|
Cellosaurus
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cellosaurus |
dbSNP
|
|
EDAM
|
edam |
1106
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.edxb58
|
|
GO
![]() |
go |
dbSNP
|
|
HL7
![]() |
hl7 |
2.16.840.1.113883.6.284
|
|
Identifiers.org
![]() |
miriam |
dbsnp
|
|
N2T
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n2t |
dbsnp
|
|
NCBI
|
ncbi |
dbSNP
|
|
Prefix Commons
|
prefixcommons |
dbsnp
|
|
re3data
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re3data |
r3d100010652
|
|
UniProt
|
uniprot |
DB-0013
|
|
Wikidata
|
wikidata |
P6861
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:rs121909098
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
dbSNP Reference SNP number | dbsnp |
https://www.ncbi.nlm.nih.gov/snp/rs121909098 |
Bioregistry | bioregistry |
https://bioregistry.io/dbsnp:rs121909098 |
Identifiers.org | miriam |
https://identifiers.org/dbsnp:rs121909098 |
Name-to-Thing | n2t |
https://n2t.net/dbsnp:rs121909098 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/dbsnp:rs121909098 |
sib |
SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |