Registry NCBI dbSNP
The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
- Prefix
dbsnp- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in NCBI dbSNP should match this regular expression:
^rs\d+$ - Example Local Unique Identifier
- rs121909098 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from NCBI dbSNP should match this regular expression:
^dbsnp:rs\d+$ - Example CURIE
- dbsnp:rs121909098
Metaregistry
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for dbsnp.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| Cellosaurus Registry | cellosaurus |
dbSNP
|
FAIRSharing
|
fairsharing |
FAIRsharing.edxb58
|
| Gene Ontology Registry | go |
dbSNP
|
Identifiers.org
|
miriam |
dbsnp
|
Name-to-Thing
|
n2t |
dbsnp
|
| National Center for Biotechnology Information Registry | ncbi |
dbSNP
|
| Prefix Commons | prefixcommons |
dbSNP
|
| UniProt Cross-ref database | uniprot |
dbSNP
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbsnp:rs121909098 is used to demonstrate the provides available for
dbsnp. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| NCBI dbSNP | dbsnp |
https://www.ncbi.nlm.nih.gov/snp/rs121909098 |
| Bioregistry | bioregistry |
https://bioregistry.io/dbsnp:rs121909098 |
| Identifiers.org | miriam |
https://identifiers.org/dbsnp:rs121909098 |
| Name-to-Thing | n2t |
https://n2t.net/dbsnp:rs121909098 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| sib | SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |