BindingDB is the first public database of protein-small molecule affinity data.

Prefix

bindingdb

Keywords

chemistry computational chemistry drug discovery interaction life science medicinal chemistry protein

Links

Homepage

Contact

Michael K. Gilson   0000-0002-3375-1738

Pattern for Local Unique Identifiers

Local identifiers in BindingDB should match this regular expression:
^\w\d+$

Example Local Unique Identifier

e999   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BindingDB should match this regular expression:
^bindingdb:\w\d+$

Example CURIE

bindingdb:e999

Publications

• 2024 BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data
• 2015 BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology
• 2006 BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier e999 is used to demonstrate the providers available for BindingDB. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.