BindingDB is the first public database of protein-small molecule affinity data.

Prefix

bindingdb

Keywords

affinity binding site chemistry chemistry databases computational chemistry drug discovery drug interaction drug target drug-like compound interaction life science medicinal chemistry protein protein interactions

Links

Homepage

Publications

2024 BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data

2015 BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology

2006 BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities

Pattern for Local Unique Identifiers

Local unique identifiers in BindingDB should match this regular expression:
^\d+$

Example Local Unique Identifier

999   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BindingDB should match this regular expression:
^bindingdb:\d+$

Example CURIE

bindingdb:999

Contact

Michael K. Gilson   0000-0002-3375-1738

Identifier Space Owner

University of California, San Diego

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 9 mappings to external registries with 6 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 999 is used to demonstrate the providers available for BindingDB. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.