appears_in: []
contact:
  email: mgilson@health.ucsd.edu
  name: Michael K. Gilson
  orcid: 0000-0002-3375-1738
depends_on: []
deprecated: false
description: BindingDB is the first public database of protein-small molecule affinity
  data.
example: '999'
example_extras: []
homepage: https://www.bindingdb.org
keywords:
- chemistry
- computational chemistry
- drug discovery
- interaction
- life science
- medicinal chemistry
- protein
mappings:
  biocontext: BINDINGDB
  fairsharing: FAIRsharing.3b36hk
  miriam: bindingdb
  n2t: bindingdb
  pathguide: '50'
  prefixcommons: bindingdb
  re3data: r3d100012074
  uniprot: DB-0127
name: BindingDB
namespace_in_lui: false
pattern: ^\d+$
preferred_prefix: bindingdb
prefix: bindingdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/bindingdb:$1
publications:
- doi: 10.1093/nar/gkae1075
  pubmed: '39574417'
  title: 'BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding
    data'
  year: 2024
- doi: 10.1093/nar/gkv1072
  pmc: PMC4702793
  pubmed: '26481362'
  title: 'BindingDB in 2015: A public database for medicinal chemistry, computational
    chemistry and systems pharmacology'
  year: 2015
- doi: 10.1093/nar/gkl999
  pmc: PMC1751547
  pubmed: '17145705'
  title: 'BindingDB: a web-accessible database of experimentally determined protein-ligand
    binding affinities'
  year: 2006
synonyms: []
uri_format: http://www.bindingdb.org/rwd/entry/$1
