ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.

Prefix

arrayexpress

Keywords

expression functional genomics microarray nucleotide

Links

Homepage

Contact

Alvis Brazma   0000-0001-5988-7409

Pattern for Local Unique Identifiers

Local identifiers in ArrayExpress should match this regular expression:
^[AEP]-\w{4}-\d+$

Example Local Unique Identifier

E-MEXP-1712   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ArrayExpress should match this regular expression:
^arrayexpress:[AEP]-\w{4}-\d+$

Example CURIE

arrayexpress:E-MEXP-1712

Publications

• 2019 ArrayExpress update - from bulk to single-cell expression data
• 2014 ArrayExpress update--simplifying data submissions
• 2003 ArrayExpress--a public repository for microarray gene expression data at the EBI

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1141

Contributors

• contributor Sumir H Pandit   0000-0002-1216-4761   sumirp

A summary of the relations in the Bioregistry schema can be found here.

In Collection

Synapse.org external links

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier E-MEXP-1712 is used to demonstrate the providers available for ArrayExpress. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.