Registry KEGG Compound

Suggest

KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.

Prefix: kegg.compound
Alternative Prefixes: KEGG COMPOUND KEGG.COMPOUND
Keywords: chemical compound chemical structure dna interaction/pathway protein rna small molecule
Links: Homepage
Publications: 2012 Using the KEGG database resource; https://bioregistry.io/pubmed:20460463; https://bioregistry.io/pubmed:19327755; https://bioregistry.io/pubmed:17921532; https://bioregistry.io/pubmed:17400247; https://bioregistry.io/pubmed:14505407

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in KEGG Compound should match this regular expression:
^C\d+$
Example Local Unique Identifier: C12345 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from KEGG Compound should match this regular expression:
^kegg\.compound:C\d+$
Example CURIE: kegg.compound:C12345

Contacts

Contact: Minoru Kanehisa 0000-0001-6123-540X

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 ): kegg
In Collection (2): ChEBI Data Sources Synapse.org external links

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`KEGG.COMPOUND`
EDAM	`edam`	`2605`
Integbio	`integbio`	`nbdc00814`
Identifiers.org	`miriam`	`kegg.compound`
N2T	`n2t`	`kegg.compound`
Prefix Commons	`prefixcommons`	`kegg.compound`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier C12345 is used to demonstrate the providers available for KEGG Compound. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
KEGG Compound	`kegg.compound`	https://www.kegg.jp/entry/C12345
Bioregistry	`bioregistry`	https://bioregistry.io/kegg.compound:C12345
Identifiers.org	`miriam`	https://identifiers.org/kegg.compound:C12345
Name-to-Thing	`n2t`	https://n2t.net/kegg.compound:C12345

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Bio2RDF	`bio2rdf`	http://bio2rdf.org/kegg.compound:C12345

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("KEGG COMPOUND")
'kegg.compound'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("kegg.compound")
{'KEGG COMPOUND', 'KEGG.COMPOUND'}

This name annotation was originally annotated in Identifiers.org and is redistributed under the CC BY 4.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("kegg.compound")
'KEGG Compound'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("kegg.compound")
'https://www.genome.jp/kegg/ligand.html'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("kegg.compound")
'Minoru Kanehisa'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("kegg.compound")
'kanehisa@kuicr.kyoto-u.ac.jp'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("kegg.compound")
'0000-0001-6123-540X'