The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.
- Prefix
hpa- Keywords
- biomedical science protein proteomics structure systems biology transcriptomics
- Links
- Homepage
- Contact
- Mathias Uhlen 0000-0002-4858-8056
- Pattern for Local Unique Identifiers
-
Local identifiers in Human Protein Atlas tissue profile information should match this regular expression:
^ENSG\d{11}$ - Example Local Unique Identifier
- ENSG00000026508 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Human Protein Atlas tissue profile information should match this regular expression:
^hpa:ENSG\d{11}$ - Example CURIE
- hpa:ENSG00000026508
- Publications
-
- 2017 A pathology atlas of the human cancer transcriptome
- 2017 A subcellular map of the human proteome
- 2016 Transcriptomics resources of human tissues and organs
- 2015 Proteomics. Tissue-based map of the human proteome
- 2010 Towards a knowledge-based Human Protein Atlas
- 2008 The Human Protein Atlas--a tool for pathology
- 2008 A genecentric Human Protein Atlas for expression profiles based on antibodies
- 2005 A human protein atlas for normal and cancer tissues based on antibody proteomics
- A subcellular map of the human proteome.
- A genecentric Human Protein Atlas for expression profiles based on antibodies.
- A human protein atlas for normal and cancer tissues based on antibody proteomics.
Metaregistry Human Protein Atlas tissue profile information
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
HPA
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.j0t0pe
|
|
GO
|
go |
HPA
|
|
Identifiers.org
|
miriam |
hpa
|
|
N2T
|
n2t |
hpa
|
|
Prefix Commons
|
prefixcommons |
hpa
|
|
re3data
|
re3data |
r3d100010931
|
|
UniProt
|
uniprot |
DB-0046
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ENSG00000026508 is used to demonstrate the providers
available for Human Protein Atlas tissue profile information. A guide for curating additional providers can be found
here.
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/hpa:ENSG00000026508 |