biocontext:
  is_identifiers: true
  is_obo: false
  prefix: HPA
  uri_format: http://identifiers.org/hpa/$1
fairsharing:
  abbreviation: HPA
  contact:
    email: mathias.uhlen@scilifelab.se
    name: Mathias Uhlen
    orcid: 0000-0002-4858-8056
  description: 'The Human Protein Atlas (HPA) portal is a publicly available database
    with millions of high-resolution images showing the spatial distribution of proteins
    in a number of different wild-type tissues, cancer types and human cell lines.
    The goal of the HPA is to map all the human proteins in cells, tissues and organs
    using an integration of various omics technologies, including antibody-based imaging,
    mass spectrometry-based proteomics, transcriptomics and systems biology. The HPA
    is composed of six parts: the Tissue Atlas, the Single Cell Type Atlas, the Pathology
    Atlas, the Blood Atlas, the Brain Atlas, and the Cell Atlas.'
  homepage: https://www.proteinatlas.org/
  license: CC BY-SA 3.0
  name: The Human Protein Atlas
  prefix: FAIRsharing.j0t0pe
  publications:
  - doi: 10.1074/mcp.R800013-MCP200
    pubmed_id: 18669619
    title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
  - doi: 10.1002/path.2440
    pubmed_id: 18853439
    title: The Human Protein Atlas--a tool for pathology.
  - doi: 10.15252/msb.20155865
    pubmed_id: 27044256
    title: Transcriptomics resources of human tissues and organs.
  - doi: 10.1126/science.1260419
    pubmed_id: 25613900
    title: Tissue-based map of the human proteome.
  - doi: 10.1126/science.aan2507
    pubmed_id: 28818916
    title: A pathology atlas of the human cancer transcriptome
  - doi: 10.1038/nbt1210-1248
    pubmed_id: 21139605
    title: Towards a knowledge-based Human Protein Atlas.
  - doi: 10.1074/mcp.M500279-MCP200
    pubmed_id: 16127175
    title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
  - doi: eaal3321
    pubmed_id: 28495876
    title: A subcellular map of the human proteome.
  subjects:
  - Proteomics
  - Transcriptomics
  - Biomedical Science
  - Systems Biology
  twitter: ProteinAtlas
go:
  homepage: http://www.proteinatlas.org/
  name: Human Protein Atlas tissue profile information
  prefix: HPA
  uri_format: http://www.proteinatlas.org/tissue_profile.php?antibody_id=$1
mappings:
  biocontext: HPA
  fairsharing: FAIRsharing.j0t0pe
  go: HPA
  miriam: hpa
  n2t: hpa
  prefixcommons: hpa
  re3data: r3d100010931
  uniprot: DB-0046
miriam:
  deprecated: false
  description: The Human Protein Atlas (HPA) is a publicly available database with
    high-resolution images showing the spatial distribution of proteins in different
    normal and cancer human cell lines. Primary access to this collection is through
    Ensembl Gene identifiers.
  homepage: http://www.proteinatlas.org/
  id: '00000336'
  name: HPA
  namespaceEmbeddedInLui: false
  pattern: ^ENSG\d{11}$
  prefix: hpa
  sampleId: ENSG00000026508
  uri_format: http://www.proteinatlas.org/$1
n2t:
  description: The Human Protein Atlas (HPA) is a publicly available database with
    high-resolution images showing the spatial distribution of proteins in different
    normal and cancer human cell lines. Primary access to this collection is through
    Ensembl Gene identifiers.
  example: ENSG00000026508
  homepage: http://www.proteinatlas.org/
  name: Human Protein Atlas at AlbaNova University
  namespaceEmbeddedInLui: false
  pattern: ^ENSG\d{11}$
  prefix: hpa
  uri_format: http://www.proteinatlas.org/$1
prefixcommons:
  description: The Human Protein Atlas (HPA) portal is a publicly available database
    with millions of high-resolution images showing the spatial distribution of proteins
    in 48 different normal tissues and 20 different cancer types as well as 47 different
    human cell lines.
  example: ENSG00000026508
  homepage: http://www.proteinatlas.org/
  keywords:
  - protein
  - structure
  name: Human Protein Atlas
  pattern: ^ENSG\d{11}$
  prefix: hpa
  pubmed_ids:
  - '18669619'
  uri_format: http://www.proteinatlas.org/gene_info.php?ensembl_gene_id=$1
publications:
- doi: 10.1126/science.aan2507
  pubmed: '28818916'
  title: A pathology atlas of the human cancer transcriptome.
  year: 2017
- doi: 10.1126/science.aal3321
  pubmed: '28495876'
  title: A subcellular map of the human proteome.
  year: 2017
- doi: 10.15252/msb.20155865
  pmc: PMC4848759
  pubmed: '27044256'
  title: "Transcriptomics resources of human tissues and\_organs."
  year: 2016
- doi: 10.1126/science.1260419
  pubmed: '25613900'
  title: Proteomics. Tissue-based map of the human proteome.
  year: 2015
- doi: 10.1038/nbt1210-1248
  pubmed: '21139605'
  title: Towards a knowledge-based Human Protein Atlas.
  year: 2010
- doi: 10.1002/path.2440
  pubmed: '18853439'
  title: The Human Protein Atlas--a tool for pathology.
  year: 2008
- doi: 10.1074/mcp.r800013-mcp200
  pubmed: '18669619'
  title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
  year: 2008
- doi: 10.1074/mcp.m500279-mcp200
  pubmed: '16127175'
  title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
  year: 2005
- doi: 10.1074/mcp.r800013-mcp200
  pubmed: '18669619'
  title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
- doi: 10.1002/path.2440
  pubmed: '18853439'
  title: The Human Protein Atlas--a tool for pathology.
- doi: 10.15252/msb.20155865
  pubmed: '27044256'
  title: Transcriptomics resources of human tissues and organs.
- doi: 10.1126/science.1260419
  pubmed: '25613900'
  title: Tissue-based map of the human proteome.
- doi: 10.1126/science.aan2507
  pubmed: '28818916'
  title: A pathology atlas of the human cancer transcriptome
- doi: 10.1038/nbt1210-1248
  pubmed: '21139605'
  title: Towards a knowledge-based Human Protein Atlas.
- doi: 10.1074/mcp.m500279-mcp200
  pubmed: '16127175'
  title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
- doi: eaal3321
  pubmed: '28495876'
  title: A subcellular map of the human proteome.
- pubmed: '18669619'
- doi: 10.1126/science.1260419
  pubmed: '25613900'
- doi: 10.1074/mcp.r800013-mcp200
  pubmed: '18669619'
  title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
- doi: 10.1002/path.2440
  pubmed: '18853439'
  title: The Human Protein Atlas--a tool for pathology.
- doi: 10.15252/msb.20155865
  pubmed: '27044256'
  title: Transcriptomics resources of human tissues and organs.
- doi: 10.1126/science.1260419
  pubmed: '25613900'
  title: Tissue-based map of the human proteome.
- doi: 10.1126/science.aan2507
  pubmed: '28818916'
  title: A pathology atlas of the human cancer transcriptome
- doi: 10.1038/nbt1210-1248
  pubmed: '21139605'
  title: Towards a knowledge-based Human Protein Atlas.
- doi: 10.1074/mcp.m500279-mcp200
  pubmed: '16127175'
  title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
- doi: eaal3321
  pubmed: '28495876'
  title: A subcellular map of the human proteome.
- pubmed: '18669619'
- doi: 10.1126/science.1260419
  pubmed: '25613900'
- doi: 10.1074/mcp.r800013-mcp200
  pubmed: '18669619'
  title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
- doi: 10.1002/path.2440
  pubmed: '18853439'
  title: The Human Protein Atlas--a tool for pathology.
- doi: 10.15252/msb.20155865
  pubmed: '27044256'
  title: Transcriptomics resources of human tissues and organs.
- doi: 10.1126/science.1260419
  pubmed: '25613900'
  title: Tissue-based map of the human proteome.
- doi: 10.1126/science.aan2507
  pubmed: '28818916'
  title: A pathology atlas of the human cancer transcriptome
- doi: 10.1038/nbt1210-1248
  pubmed: '21139605'
  title: Towards a knowledge-based Human Protein Atlas.
- doi: 10.1074/mcp.m500279-mcp200
  pubmed: '16127175'
  title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
- doi: eaal3321
  pubmed: '28495876'
  title: A subcellular map of the human proteome.
- pubmed: '18669619'
- doi: 10.1126/science.1260419
  pubmed: '25613900'
- doi: 10.1074/mcp.r800013-mcp200
  pubmed: '18669619'
  title: A genecentric Human Protein Atlas for expression profiles based on antibodies.
- doi: 10.1002/path.2440
  pubmed: '18853439'
  title: The Human Protein Atlas--a tool for pathology.
- doi: 10.15252/msb.20155865
  pubmed: '27044256'
  title: Transcriptomics resources of human tissues and organs.
- doi: 10.1126/science.1260419
  pubmed: '25613900'
  title: Tissue-based map of the human proteome.
- doi: 10.1126/science.aan2507
  pubmed: '28818916'
  title: A pathology atlas of the human cancer transcriptome
- doi: 10.1038/nbt1210-1248
  pubmed: '21139605'
  title: Towards a knowledge-based Human Protein Atlas.
- doi: 10.1074/mcp.m500279-mcp200
  pubmed: '16127175'
  title: A human protein atlas for normal and cancer tissues based on antibody proteomics.
- doi: eaal3321
  pubmed: '28495876'
  title: A subcellular map of the human proteome.
- pubmed: '18669619'
- doi: 10.1126/science.1260419
  pubmed: '25613900'
re3data:
  description: The Swedish Human Protein Atlas project has been set up to allow for
    a systematic exploration of the human proteome using Antibody-Based Proteomics.
    This is accomplished by combining high-throughput generation of affinity-purified
    antibodies with protein profiling in a multitude of tissues and cells assembled
    in tissue microarrays. Confocal microscopy analysis using human cell lines is
    performed for more detailed protein localization. The program hosts the Human
    Protein Atlas portal with expression profiles of human proteins in tissues and
    cells.  The main objective of the resource centre is to produce specific antibodies
    to human target proteins using a high-throughput production method involving the
    cloning and protein expression of Protein Epitope Signature Tags (PrESTs). After
    purification, the antibodies are used to study expression profiles in cells and
    tissues and for functional analysis of the corresponding proteins in a wide range
    of platforms.
  homepage: https://www.proteinatlas.org/
  name: The Human Protein Atlas
  prefix: r3d100010931
  synonyms:
  - HPA
  xrefs:
    fairsharing: FAIRsharing.j0t0pe
    miriam: '00000336'
    nif: 0000-00204
    omics: 03913
    scr: '006710'
uniprot:
  abbreviation: HPA
  category: Organism-specific databases
  homepage: https://www.proteinatlas.org/
  name: Human Protein Atlas
  prefix: DB-0046
  publications:
  - doi: 10.1126/science.1260419
    pubmed: '25613900'
  uri_format: https://www.proteinatlas.org/$1