The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.

Prefix

ccds

Keywords

gene life science protein

Links

Homepage

Contact

Terence D. Murphy   0000-0001-9311-9745

Pattern for Local Unique Identifiers

Local identifiers in Consensus CDS should match this regular expression:
^CCDS\d+(\.\d+)?$

Example Local Unique Identifiers

CCDS12976   Resolve
CCDS12976.1   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Consensus CDS should match this regular expression:
^ccds:CCDS\d+(\.\d+)?$

Example CURIEs

ccds:CCDS12976
ccds:CCDS12976.1

Publications

• https://bioregistry.io/pubmed:29126148
• 2009 The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CCDS12976 is used to demonstrate the providers available for Consensus CDS. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.