A collection of ontologies relevant within the NFDI4Chem project that is mostly based on the overview paper Ontologies4Chem: the landscape of ontologies in chemistry.

NFDI4Chem deploys a custom instance of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE).

Identifier
0000014
Contributors
Philip Strömert
Size
51
References
https://terminology.nfdi4chem.de/ts/
https://doi.org/10.1515/pac-2021-2007
Prefix Name
afo Allotrope Merged Ontology Suite
bfo Basic Formal Ontology
bto BRENDA Tissue Ontology
chebi Chemical Entities of Biological Interest
cheminf Chemical Information Ontology
chemrof Chemical Entity Materials and Reactions Ontological Framework
chiro ChEBI Integrated Role Ontology
chmo Chemical Methods Ontology
duo Data Use Ontology
edam EDAM Ontology
efo Experimental Factor Ontology
enm eNanoMapper ontology
envo Environment Ontology
fair FAIR Vocabulary
fix Physico-chemical methods and properties
gainesville.core Gainesville Core Ontology
iao Information Artifact Ontology
mod Protein modification
mop Molecular Process Ontology
ms Mass spectrometry ontology
ncit NCI Thesaurus
nmr NMR-instrument specific component of metabolomics investigations
obi Ontology for Biomedical Investigations
oboe The Extensible Observation Ontology
om Ontology of units of Measure
ontorxn OntoRXN
pato Phenotype And Trait Ontology
proco Process Chemistry Ontology
prov PROV Namespace
reproduceme REPRODUCE-ME Ontology
rex Physico-chemical process
ro Relation Ontology
rxno Name Reaction Ontology
sepio Scientific Evidence and Provenance Information Ontology
sio Semanticscience Integrated Ontology
sosa Sensor, Observation, Sample, and Actuator Ontology
ssn Semantic Sensor Network Ontology
ssn.system System capabilities, operating ranges, and survival ranges ontology
suprabank.additive SupraBank Additive
suprabank.buffer SupraBank Buffer
suprabank.interaction SupraBank Interaction
suprabank.molecule SupraBank Molecule
suprabank.solvent SupraBank Solvent
swo Software ontology
time Time Ontology in OWL
uo Units of measurement ontology
vibso Vibrational Spectroscopy Ontology
voc4cat A vocabulary for the catalysis disciplines
worldavatar.compchem Computational Chemistry Ontology
worldavatar.kin Ontology for Chemical Kinetic Reaction Mechanisms
worldavatar.os OntoSpecies - Chemical Species Ontology for Data Integration and Knowledge Discovery