The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.

Prefix
mod
Preferred Prefix
MOD
Version
2020-04-14
Links
Homepage OBO OWL
Contact
pierre-alain.binz@chuv.ch
Pattern
^MOD:\d{5}$
Namespace in Pattern
True (MOD:)
Example Identifier
01467   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for mod.

Registry Name Metaprefix Metaidentifier
BioPortal Prefixes bioportal PSIMOD
Gene Ontology Registry go PSI-MOD
Identifiers.org miriam mod
Name-to-Thing n2t mod
OBO Foundry obofoundry MOD
Ontology Lookup Service ols mod
OntoBee ontobee MOD
Prefix Commons prefixcommons MOD
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE mod:01467 is used to demonstrate the provides available for mod. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Protein modification mod https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:01467
Bioregistry bioregistry https://bioregistry.io/mod:01467
Identifiers.org miriam https://identifiers.org/MOD:01467
OBO Foundry obofoundry http://purl.obolibrary.org/obo/MOD_01467
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/mod/terms?iri=http://purl.obolibrary.org/obo/MOD_01467
Name-to-Thing n2t https://n2t.net/mod:01467
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/PSIMOD/?p=classes&conceptid=http://purl.obolibrary.org/obo/MOD_01467