VectorBase is part of the VEuPathDB, a NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens and related species of interest. Currently, VectorBase contains genome information for approximately 80 organisms: mosquitoes, bed bugs, biting midges, ticks, tsetse flies, mites, sand flies, house flies, body lice, stable flies, kissing bugs, and a snail which is an intermediate host.
vectorbase
Local identifiers in Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens should match this
regular expression:
^\D{4}\d{6}(\-\D{2})?$
Compact URIs (CURIEs) constructed from Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens should match
this regular expression:
^vectorbase:\D{4}\d{6}(\-\D{2})?$
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
VECTORBASE
|
|
FAIRSharing | fairsharing |
FAIRsharing.3etvdn
|
|
Integbio | integbio |
nbdc01909
|
|
Identifiers.org | miriam |
vectorbase
|
|
N2T | n2t |
vectorbase
|
|
NCBI | ncbi |
VectorBase
|
|
Prefix Commons | prefixcommons |
vectorbase
|
|
re3data | re3data |
r3d100010880
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
vectorbase:ISCW007415
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/vectorbase:ISCW007415 |
vectorbase.alt1 |
Vectorbase Alt. 1 | https://www.vectorbase.org/search/site/ISCW007415?&site="Genome" |
vectorbase.alt2 |
Vectorbase Alt. 2 | https://vectorbase.org/vectorbase/app/record/gene/ISCW007415 |