Database of validation results for ligands and non-standard residues in the Protein Data Bank.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the pdb prefix. For all use cases, you should use pdb instead of validatordb.

Prefix

validatordb

Keywords

life science

Links

Homepage

Contact

David Sehnal   0000-0002-0682-3089

Pattern for Local Unique Identifiers

Local identifiers in ValidatorDB should match this regular expression:
^[A-Za-z0-9\/]+$

Example Local Unique Identifier

2h6o   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ValidatorDB should match this regular expression:
^validatordb:[A-Za-z0-9\/]+$

Example CURIE

validatordb:2h6o

Publications

2014 ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

A summary of the relations in the Bioregistry schema can be found here.

Provides

pdb

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 2h6o is used to demonstrate the providers available for ValidatorDB. A guide for curating additional providers can be found here.