PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.

Prefix
pombase
Alternative Prefixes
PomBase
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PomBase systematic ID should match this regular expression:
^S\w+(\.)?\w+(\.)?$

Example Local Unique Identifier
SPCC13B11.01   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PomBase systematic ID should match this regular expression:
^pombase:S\w+(\.)?\w+(\.)?$

Example CURIE
pombase:SPCC13B11.01
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for pombase.

Registry Name Metaprefix External Prefix
Gene Ontology Registry go PomBase
Identifiers.org miriam pombase
Name-to-Thing n2t pombase
National Center for Biotechnology Information Registry ncbi PomBase
Prefix Commons prefixcommons PomBase
UniProt Cross-ref database uniprot PomBase
Wikidata Property wikidata P6245
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pombase:SPCC13B11.01 is used to demonstrate the provides available for pombase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PomBase systematic ID pombase http://www.pombase.org/spombe/result/SPCC13B11.01
Bioregistry bioregistry https://bioregistry.io/pombase:SPCC13B11.01
Identifiers.org miriam https://identifiers.org/pombase:SPCC13B11.01
Name-to-Thing n2t https://n2t.net/pombase:SPCC13B11.01