PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.

Alternative Prefixes
life science
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PomBase should match this regular expression:

Example Local Unique Identifier
SPCC13B11.01   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PomBase should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry PomBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PomBase
Biolink Biolink Model Registry logo biolink PomBase
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.8jsya3
GO Gene Ontology Registry logo go PomBase
Identifiers.org Identifiers.org logo miriam pombase
N2T Name-to-Thing logo n2t pombase
NCBI National Center for Biotechnology Information Registry logo ncbi PomBase
Prefix Commons Prefix Commons logo prefixcommons pombase
re3data Registry of Research Data Repositories logo re3data r3d100011478
UniProt UniProt Cross-ref database logo uniprot DB-0031
Wikidata Wikidata Property logo wikidata P6245

Providers are various services that resolve CURIEs to URLs. The example CURIE pombase:SPCC13B11.01 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PomBase pombase https://www.pombase.org/gene/SPCC13B11.01
Bioregistry bioregistry https://bioregistry.io/pombase:SPCC13B11.01
Identifiers.org miriam https://identifiers.org/pombase:SPCC13B11.01
Name-to-Thing n2t https://n2t.net/pombase:SPCC13B11.01
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pombase:SPCC13B11.01