PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.
pombase
Local identifiers in PomBase should match this
regular expression:
^S\w+(\.)?\w+(\.)?$
Compact URIs (CURIEs) constructed from PomBase should match
this regular expression:
^pombase:S\w+(\.)?\w+(\.)?$
A summary of the relations in the Bioregistry schema can be found here.
The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PomBase
|
|
Biolink
|
biolink |
PomBase
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.8jsya3
|
|
GO
![]() |
go |
PomBase
|
|
Identifiers.org
![]() |
miriam |
pombase
|
|
N2T
![]() |
n2t |
pombase
|
|
NCBI
|
ncbi |
PomBase
|
|
Prefix Commons
|
prefixcommons |
pombase
|
|
re3data
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re3data |
r3d100011478
|
|
UniProt
|
uniprot |
DB-0031
|
|
Wikidata
|
wikidata |
P6245
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
pombase:SPCC13B11.01
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
PomBase | pombase |
https://www.pombase.org/gene/SPCC13B11.01 |
Bioregistry | bioregistry |
https://bioregistry.io/pombase:SPCC13B11.01 |
Identifiers.org | miriam |
https://identifiers.org/pombase:SPCC13B11.01 |
Name-to-Thing | n2t |
https://n2t.net/pombase:SPCC13B11.01 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/pombase:SPCC13B11.01 |