PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.

Alternative Prefixes
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PomBase should match this regular expression:

Example Local Unique Identifier
SPCC13B11.01   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PomBase should match this regular expression:

Example CURIE
Metaregistry PomBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for pombase with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PomBase
Biolink Model Registry biolink PomBase
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.8jsya3
Gene Ontology Registry go PomBase
Identifiers.org Identifiers.org logo miriam pombase
Name-to-Thing Name-to-Thing logo n2t pombase
National Center for Biotechnology Information Registry ncbi PomBase
Prefix Commons prefixcommons pombase
Registry of Research Data Repositories re3data r3d100011478
UniProt Cross-ref database uniprot DB-0031
Wikidata Property Wikidata Property logo wikidata P6245

Providers are various services that resolve CURIEs to URLs. The example CURIE pombase:SPCC13B11.01 is used to demonstrate the provides available for pombase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PomBase pombase https://www.pombase.org/gene/SPCC13B11.01
Bioregistry bioregistry https://bioregistry.io/pombase:SPCC13B11.01
Identifiers.org miriam https://identifiers.org/pombase:SPCC13B11.01
Name-to-Thing n2t https://n2t.net/pombase:SPCC13B11.01