appears_in: []
contact:
  email: vw253@cam.ac.uk
  github: ValWood
  name: Valerie Wood
  orcid: 0000-0001-6330-7526
depends_on: []
deprecated: false
description: PomBase is a model organism database established to provide access to
  molecular data and biological information for the fission yeast Schizosaccharomyces
  pombe. It encompasses annotation of genomic sequence and features, comprehensive
  manual literature curation and genome-wide data sets.
example: SPCC13B11.01
example_extras: []
homepage: https://www.pombase.org/
keywords:
- life science
license: CC-BY-4.0
mappings:
  biocontext: PomBase
  biolink: PomBase
  fairsharing: FAIRsharing.8jsya3
  go: PomBase
  integbio: nbdc00332
  miriam: pombase
  n2t: pombase
  ncbi: PomBase
  prefixcommons: pombase
  re3data: r3d100011478
  uniprot: DB-0031
  wikidata: P6245
name: PomBase
namespace_in_lui: false
pattern: ^S\w+(\.)?\w+(\.)?$
preferred_prefix: pombase
prefix: pombase
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/pombase:$1
publications:
- doi: 10.1093/nar/gky961
  pmc: PMC6324063
  pubmed: '30321395'
  title: 'PomBase 2018: user-driven reimplementation of the fission yeast database
    provides rapid and intuitive access to diverse, interconnected information'
  year: 2019
- doi: 10.1186/s12915-016-0276-z
  pmc: PMC4918006
  pubmed: '27334346'
  title: 'Model organism databases: essential resources that need the support of both
    funders and users'
  year: 2016
- doi: 10.1093/nar/gku1040
  pmc: PMC4383888
  pubmed: '25361970'
  title: 'PomBase 2015: updates to the fission yeast database'
  year: 2014
- doi: 10.1186/1471-2105-15-155
  pmc: PMC4039540
  pubmed: '24885854'
  title: A method for increasing expressivity of Gene Ontology annotations using a
    compositional approach
  year: 2014
- doi: 10.1093/bioinformatics/btu103
  pmc: PMC4058955
  pubmed: '24574118'
  title: 'Canto: an online tool for community literature curation'
  year: 2014
- doi: 10.1093/bioinformatics/btt266
  pmc: PMC3694669
  pubmed: '23658422'
  title: 'FYPO: the fission yeast phenotype ontology'
  year: 2013
- doi: 10.1093/nar/gks1050
  pmc: PMC3531070
  pubmed: '23161678'
  title: Gene Ontology annotations and resources
  year: 2012
- doi: 10.1093/nar/gkr1028
  pmc: PMC3245151
  pubmed: '22102568'
  title: 'The Gene Ontology: enhancements for 2011'
  year: 2011
- doi: 10.1093/nar/gkr853
  pmc: PMC3245111
  pubmed: '22039153'
  title: 'PomBase: a comprehensive online resource for fission yeast'
  year: 2011
synonyms:
- PomBase
uri_format: https://www.pombase.org/gene/$1
