Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.

Prefix
pocketome
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Pocketome should match this regular expression:
^[A-Za-z_0-9]+$

Example Local Unique Identifier
1433C_TOBAC_1_252   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pocketome should match this regular expression:
^pocketome:[A-Za-z_0-9]+$

Example CURIE
pocketome:1433C_TOBAC_1_252
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for pocketome.

Registry Name Metaprefix External Prefix
Identifiers.org miriam pocketome
Name-to-Thing n2t pocketome
Prefix Commons prefixcommons POCKETOME
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pocketome:1433C_TOBAC_1_252 is used to demonstrate the provides available for pocketome. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pocketome pocketome http://www.pocketome.org/files/1433C_TOBAC_1_252.html
Bioregistry bioregistry https://bioregistry.io/pocketome:1433C_TOBAC_1_252
Identifiers.org miriam https://identifiers.org/pocketome:1433C_TOBAC_1_252
Name-to-Thing n2t https://n2t.net/pocketome:1433C_TOBAC_1_252