Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Pocketome should match this regular expression:

Example Local Unique Identifier
1433C_TOBAC_1_252   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pocketome should match this regular expression:

Example CURIE
Metaregistry Pocketome

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for pocketome with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext POCKETOME
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.tc6df8
Identifiers.org Identifiers.org logo miriam pocketome
Name-to-Thing Name-to-Thing logo n2t pocketome

Providers are various services that resolve CURIEs to URLs. The example CURIE pocketome:1433C_TOBAC_1_252 is used to demonstrate the provides available for pocketome. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pocketome pocketome http://www.pocketome.org/files/1433C_TOBAC_1_252.html
Bioregistry bioregistry https://bioregistry.io/pocketome:1433C_TOBAC_1_252
Identifiers.org miriam https://identifiers.org/pocketome:1433C_TOBAC_1_252
Name-to-Thing n2t https://n2t.net/pocketome:1433C_TOBAC_1_252