The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.

Prefix

pharmgkb.pathways

Keywords

pathway pharmacogenomics

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in PharmGKB should match this regular expression:
^PA\d+$

Example Local Unique Identifier

PA146123006   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB should match this regular expression:
^pharmgkb\.pathways:PA\d+$

Example CURIE

pharmgkb.pathways:PA146123006

Publications

• 2011 From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource.
• 2001 Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base.

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for pharmgkb.pathways with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE pharmgkb.pathways:PA146123006 is used to demonstrate the provides available for pharmgkb.pathways. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.