The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.

pathway pharmacogenomics
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PharmGKB should match this regular expression:

Example Local Unique Identifier
PA146123006   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB should match this regular expression:

Example CURIE
Metaregistry PharmGKB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for pharmgkb.pathways with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PHARMGKB.PATHWAYS
Biolink Biolink Model Registry logo biolink PHARMGKB.PATHWAYS
EDAM EDAM Ontology logo edam 2650 logo miriam pharmgkb.pathways
N2T Name-to-Thing logo n2t pharmgkb.pathways
Prefix Commons Prefix Commons logo prefixcommons pharmgkb.pathways
Wikidata Wikidata Property logo wikidata P7001

Providers are various services that resolve CURIEs to URLs. The example CURIE pharmgkb.pathways:PA146123006 is used to demonstrate the provides available for pharmgkb.pathways. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PharmGKB pharmgkb.pathways
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF