The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.

Prefix

pharmgkb.gene

Keywords

gene ontology pharmacogenomics

License

CC-BY-SA-4.0

Links

Homepage

Contact

Teri E Klein   0000-0001-5527-6475   TeriKlein

Pattern for Local Unique Identifiers

Local identifiers in PharmGKB Gene should match this regular expression:
^PA\w+$

Example Local Unique Identifier

PA131   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB Gene should match this regular expression:
^pharmgkb\.gene:PA\w+$

Example CURIE

pharmgkb.gene:PA131

Publications

• 2011 From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource
• 2005 PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base

A summary of the relations in the Bioregistry schema can be found here.

In Collection

FHIR External Terminologies Global Biodata Coalition - Global Core Biodata Resources

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PA131 is used to demonstrate the providers available for PharmGKB Gene. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.