Registry Pharmacogenetics and Pharmacogenomics Knowledge Base

The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.

Prefix
pharmgkb.gene
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Pharmacogenetics and Pharmacogenomics Knowledge Base should match this regular expression:
^PA\w+$

Example Local Unique Identifier
PA131   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pharmacogenetics and Pharmacogenomics Knowledge Base should match this regular expression:
^pharmgkb.gene:PA\w+$

Example CURIE
pharmgkb.gene:PA131
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for pharmgkb.gene.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal PHARMGKB
Gene Ontology Registry go PharmGKB
Identifiers.org miriam pharmgkb.gene
Name-to-Thing n2t pharmgkb.gene
Prefix Commons prefixcommons PHARMGKB.GENE
Wikidata Property wikidata P7001
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pharmgkb.gene:PA131 is used to demonstrate the provides available for pharmgkb.gene. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pharmacogenetics and Pharmacogenomics Knowledge Base pharmgkb.gene http://www.pharmgkb.org/gene/PA131
Bioregistry bioregistry https://bioregistry.io/pharmgkb.gene:PA131
Identifiers.org miriam https://identifiers.org/pharmgkb.gene:PA131
Name-to-Thing n2t https://n2t.net/pharmgkb.gene:PA131