The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.

gene ontology pharmacogenomics
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PharmGKB Gene should match this regular expression:

Example Local Unique Identifier
PA131   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB Gene should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
FHIR External Terminologies Global Biodata Coalition - Global Core Biodata Resources
Metaregistry PharmGKB Gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PHARMGKB.GENE
Biolink Biolink Model Registry logo biolink PHARMGKB.GENE
BioPortal BioPortal Prefixes logo bioportal PHARMGKB
GO Gene Ontology Registry logo go PharmGKB logo miriam pharmgkb.gene
N2T Name-to-Thing logo n2t pharmgkb.gene
Prefix Commons Prefix Commons logo prefixcommons pharmgkb.gene
UniProt UniProt Cross-ref database logo uniprot DB-0074
Wikidata Wikidata Property logo wikidata P7001

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PA131 is used to demonstrate the providers available for PharmGKB Gene. A guide for curating additional providers can be found here.

Name Metaprefix URI
PharmGKB Gene pharmgkb.gene
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF