The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.

Prefix
peptideatlas
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PeptideAtlas should match this regular expression:
^PAp[0-9]{8}$

Example Local Unique Identifier
PAp00000009   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PeptideAtlas should match this regular expression:
^peptideatlas:PAp[0-9]{8}$

Example CURIE
peptideatlas:PAp00000009
Publications
2008 PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.
Metaregistry PeptideAtlas

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for peptideatlas with 4 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext PEPTIDEATLAS
EDAM Ontology edam 2626
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.dvyrsz
Identifiers.org Identifiers.org logo miriam peptideatlas
Name-to-Thing Name-to-Thing logo n2t peptideatlas
Prefix Commons prefixcommons peptideatlas
Registry of Research Data Repositories re3data r3d100010889
UniProt Cross-ref database uniprot PeptideAtlas
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE peptideatlas:PAp00000009 is used to demonstrate the provides available for peptideatlas. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PeptideAtlas peptideatlas https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=PAp00000009
Bioregistry bioregistry https://bioregistry.io/peptideatlas:PAp00000009
Identifiers.org miriam https://identifiers.org/peptideatlas:PAp00000009
Name-to-Thing n2t https://n2t.net/peptideatlas:PAp00000009