appears_in: []
contact:
  email: evgeny.zdobnov@unige.ch
  name: Evgeny M Zdobnov
  orcid: 0000-0002-5178-1498
depends_on: []
deprecated: false
description: OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes
  across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor
  of the species under consideration, and thus OrthoDB explicitly delineates orthologs
  at each radiation along the species phylogeny. The database of orthologs presents
  available protein descriptors, together with Gene Ontology and InterPro attributes,
  which serve to provide general descriptive annotations of the orthologous groups
example: Q9P0K8
example_extras: []
homepage: https://www.orthodb.org
keywords:
- dna
- eukaryotic
- life science
- protein
mappings:
  biocontext: ORTHODB
  fairsharing: FAIRsharing.x989d5
  miriam: orthodb
  n2t: orthodb
  prefixcommons: orthodb
  uniprot: DB-0143
name: OrthoDB
namespace_in_lui: false
pattern: ^\w+$
preferred_prefix: orthodb
prefix: orthodb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/orthodb:$1
provides: uniprot
publications:
- doi: 10.1093/nar/gky1053
  pmc: PMC6323947
  pubmed: '30395283'
  title: 'OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial
    and viral genomes for evolutionary and functional annotations of orthologs'
  year: 2019
- doi: 10.1093/nar/gku1220
  pmc: PMC4383991
  pubmed: '25428351'
  title: 'OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying
    free software'
  year: 2014
- doi: 10.1093/nar/gkq930
  pmc: PMC3013786
  pubmed: '20972218'
  title: 'OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011'
  year: 2010
synonyms: []
uri_format: http://cegg.unige.ch/orthodb/results?searchtext=$1
