The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.

Prefix
opb
Keywords
concentration kinetic model life science mathematical model ontology physics structure
Links
Homepage OWL
Contact
Maxwell L. Neal   0000-0002-2390-6572
Pattern for Local Unique Identifiers

Local identifiers in Ontology of Physics for Biology should match this regular expression:
^\d+$

Example Local Unique Identifier
00573   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology of Physics for Biology should match this regular expression:
^opb:\d+$

Example CURIE
opb:00573
Namespace Embedded in LUI
This resource has been annotated by the Bioregistry as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Ontology of Physics for Biology, the banana looks like OPB_. Therefore, you may see local unique identifiers for this resource that look like OPB_00573 (instead of the canonical form 00573) and CURIEs for this resource that look like opb:OPB_00573 (instead of the canonical form opb:00573). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
Contributors
Metaregistry Ontology of Physics for Biology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl OPB
BioContext biocontext OPB
BioPortal BioPortal Prefixes logo bioportal OPB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.qcceez
Identifiers.org Identifiers.org logo miriam opb
N2T Name-to-Thing logo n2t opb
Prefix Commons Prefix Commons logo prefixcommons opb
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE opb:00573 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ontology of Physics for Biology opb https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_00573
Bioregistry bioregistry https://bioregistry.io/opb:00573
Identifiers.org miriam https://identifiers.org/opb:OPB_00573
Name-to-Thing n2t https://n2t.net/opb:00573
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/opb:00573