{"prefix":"opb","name":"Ontology of Physics for Biology","description":"The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.","pattern":"^\\d+$","uri_format":"https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/opb:$1"}],"homepage":"http://bioportal.bioontology.org/ontologies/OPB","contact":{"name":"Maxwell L. Neal","orcid":"0000-0002-2390-6572","email":"maxneal@gmail.com"},"example":"00573","example_extras":[],"download_owl":"http://aber-owl.net/media/ontologies/OPB/13/opb.owl","banana":"OPB","banana_peel":"_","deprecated":false,"mappings":{"aberowl":"OPB","biocontext":"OPB","bioportal":"OPB","fairsharing":"FAIRsharing.qcceez","miriam":"opb","n2t":"opb","prefixcommons":"opb"},"synonyms":[],"keywords":["concentration","life science","ontology","physics","structure"],"publications":[{"pubmed":"24295137","doi":"10.1186/2041-1480-4-41","pmc":"PMC3904761","title":"Ontology of physics for biology: representing physical dependencies as a basis for biological processes","year":2013},{"pubmed":"22216106","doi":"10.1371/journal.pone.0028708","pmc":"PMC3246444","title":"Physical properties of biological entities: an introduction to the ontology of physics for biology","year":2011}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"}],"preferred_prefix":"opb"}