Registry Nematode Expression Pattern DataBase

NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.

dna gene expression genome life science
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Nematode Expression Pattern DataBase should match this regular expression:

Example Local Unique Identifier
6b1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nematode Expression Pattern DataBase should match this regular expression:

Example CURIE
Metaregistry Nematode Expression Pattern DataBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for nextdb with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext NEXTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xz5m1a logo miriam nextdb
Name-to-Thing Name-to-Thing logo n2t nextdb
National Center for Biotechnology Information Registry ncbi NextDB
Prefix Commons prefixcommons nextdb

Providers are various services that resolve CURIEs to URLs. The example CURIE nextdb:6b1 is used to demonstrate the provides available for nextdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Nematode Expression Pattern DataBase nextdb
Bioregistry bioregistry miriam
Name-to-Thing n2t