NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.

Prefix
nextdb
Keywords
dna gene expression genome life science
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Nematode Expression Pattern DataBase should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier
6b1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nematode Expression Pattern DataBase should match this regular expression:
^nextdb:[A-Za-z0-9]+$

Example CURIE
nextdb:6b1
Metaregistry Nematode Expression Pattern DataBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext NEXTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xz5m1a
Integbio Integbio logo integbio nbdc00594
Identifiers.org Identifiers.org logo miriam nextdb
N2T Name-to-Thing logo n2t nextdb
NCBI National Center for Biotechnology Information Registry logo ncbi NextDB
Prefix Commons Prefix Commons logo prefixcommons nextdb
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 6b1 is used to demonstrate the providers available for Nematode Expression Pattern DataBase. A guide for curating additional providers can be found here.

Name Metaprefix URI
Nematode Expression Pattern DataBase nextdb http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=6b1
Bioregistry bioregistry https://bioregistry.io/nextdb:6b1
Identifiers.org miriam https://identifiers.org/nextdb:6b1
Name-to-Thing n2t https://n2t.net/nextdb:6b1
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/nextdb:6b1