Registry Assembly
A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.
- Prefix
ncbi.assembly- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Assembly should match this regular expression:
^[a-zA-Z0-9_\.]+$ - Example Local Unique Identifier
- GCF_000005845.2 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Assembly should match this regular expression:
^ncbi\.assembly:[a-zA-Z0-9_\.]+$ - Example CURIE
- ncbi.assembly:GCF_000005845.2
Metaregistry Assembly
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for ncbi.assembly with
3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
NCBIAssembly
|
|
Identifiers.org
|
miriam |
assembly
|
|
re3data
|
re3data |
r3d100012688
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ncbi.assembly:GCF_000005845.2
is used to demonstrate the provides available for
ncbi.assembly. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Assembly | ncbi.assembly |
https://www.ncbi.nlm.nih.gov/assembly/GCF_000005845.2 |
| Bioregistry | bioregistry |
https://bioregistry.io/ncbi.assembly:GCF_000005845.2 |
| Identifiers.org | miriam |
https://identifiers.org/assembly:GCF_000005845.2 |