Registry Genome assembly database - INSDC accessions

The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.

Prefix
insdc.gca
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Genome assembly database - INSDC accessions should match this regular expression:
^GCA_[0-9]{9}(\.[0-9]+)?$

Example Local Unique Identifier
GCA_000155495.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genome assembly database - INSDC accessions should match this regular expression:
^insdc\.gca:GCA_[0-9]{9}(\.[0-9]+)?$

Example CURIE
insdc.gca:GCA_000155495.1
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with ncbi.assembly .

Therefore, when generating an extended prefix map, insdc.gca, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for ncbi.assembly . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Genome assembly database - INSDC accessions

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext INSDC.GCA
Identifiers.org Identifiers.org logo miriam insdc.gca
N2T Name-to-Thing logo n2t insdc.gca
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE insdc.gca:GCA_000155495.1 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Genome assembly database - INSDC accessions insdc.gca https://www.ebi.ac.uk/ena/data/view/GCA_000155495.1
Bioregistry bioregistry https://bioregistry.io/insdc.gca:GCA_000155495.1
Identifiers.org miriam https://identifiers.org/insdc.gca:GCA_000155495.1
Name-to-Thing n2t https://n2t.net/insdc.gca:GCA_000155495.1
National Center for Biotechnology Information Registry ncbi https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000155495.1
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
ncbi Genome assembly database NCBI https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000155495.1