Registry Genome assembly database - INSDC accessions

The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Genome assembly database - INSDC accessions should match this regular expression:

Example Local Unique Identifier
GCA_000155495.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genome assembly database - INSDC accessions should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with ncbi.assembly .

Therefore, when generating an extended prefix map, insdc.gca, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for ncbi.assembly . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Genome assembly database - INSDC accessions

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext INSDC.GCA logo miriam insdc.gca
N2T Name-to-Thing logo n2t insdc.gca

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GCA_000155495.1 is used to demonstrate the providers available for Genome assembly database - INSDC accessions. A guide for curating additional providers can be found here.

Name Metaprefix URI
Genome assembly database - INSDC accessions insdc.gca
Bioregistry bioregistry miriam
Name-to-Thing n2t
National Center for Biotechnology Information Registry ncbi
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
ncbi Genome assembly database NCBI