Registry Genome assembly database Has Canonical
The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.
- Prefix
insdc.gca- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Genome assembly database should match this regular expression:
^GC[AF]_[0-9]{9}\.[0-9]+$ - Example Local Unique Identifier
- GCA_000155495.1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Genome assembly database should match this regular expression:
^insdc\.gca:GC[AF]_[0-9]{9}\.[0-9]+$ - Example CURIE
- insdc.gca:GCA_000155495.1
Metaregistry Genome assembly database
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
INSDC.GCA
|
|
Identifiers.org
|
miriam |
insdc.gca
|
|
N2T
|
n2t |
insdc.gca
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:GCA_000155495.1
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
ncbi |
Genome assembly database NCBI | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000155495.1 |