The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.
insdc.gcf
Local identifiers in Genome assembly database - RefSeq accessions should match this
regular expression:
^GCF_[0-9]{9}(\.[0-9]+)?$
Compact URIs (CURIEs) constructed from Genome assembly database - RefSeq accessions should match
this regular expression:
^insdc\.gcf:GCF_[0-9]{9}(\.[0-9]+)?$
A summary of the relations in the Bioregistry schema can be found here.
bioregistry.schema:0000016
)
This resource shares one or more URI format strings with ncbi.assembly .
Therefore, when generating an extended prefix map, insdc.gcf
,
its CURIE prefix synonyms, and its URI prefix synonyms are merged into the
record for
ncbi.assembly
.
If you believe that these are two distinct semantic spaces and should not be merged,
please open a new issue on the Bioregistry issue tracker
for discussion.
The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
Identifiers.org
![]() |
miriam |
refseq.gcf
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
insdc.gcf:GCF_000001405
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.