appears_in: []
contact:
  email: siqian.he@nih.gov
  name: Siqian He
  orcid: 0000-0002-1707-4167
depends_on: []
deprecated: false
description: The Molecular Modeling Database (MMDB) is a database of experimentally
  determined structures obtained from the Protein Data Bank (PDB). Since structures
  are known for a large fraction of all protein families, structure homologs may facilitate
  inference of biological function, or the identification of binding or catalytic
  sites.
example: '50885'
example_extras: []
homepage: http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure
keywords:
- dna
- interaction
- protein
- small molecule
- structure
mappings:
  biocontext: MMDB
  edam: '2667'
  miriam: mmdb
  n2t: mmdb
  pathguide: '508'
  prefixcommons: mmdb
name: Molecular Modeling Database
namespace_in_lui: false
pattern: ^\d{1,5}$
preferred_prefix: mmdb
prefix: mmdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/mmdb:$1
publications:
- doi: 10.1093/nar/gkl952
  pmc: PMC1751549
  pubmed: '17135201'
  title: 'MMDB: annotating protein sequences with Entrez''s 3D-structure database'
  year: 2006
synonyms: []
uri_format: http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1
