miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.
mirtarbase
Local identifiers in mirTarBase should match this
regular expression:
^MIRT\d{6}$
Compact URIs (CURIEs) constructed from mirTarBase should match
this regular expression:
^mirtarbase:MIRT\d{6}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
MIRTARBASE
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.f0bxfg
|
|
Identifiers.org
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miriam |
mirtarbase
|
|
N2T
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n2t |
mirtarbase
|
|
Wikidata
|
wikidata |
P2646
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:MIRT000002
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
mirTarBase | mirtarbase |
http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=MIRT000002 |
Bioregistry | bioregistry |
https://bioregistry.io/mirtarbase:MIRT000002 |
Identifiers.org | miriam |
https://identifiers.org/mirtarbase:MIRT000002 |
Name-to-Thing | n2t |
https://n2t.net/mirtarbase:MIRT000002 |