{"prefix":"mirtarbase","name":"mirTarBase","description":"miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.","pattern":"^MIRT\\d{6}$","uri_format":"https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1","providers":[],"homepage":"https://mirtarbase.cuhk.edu.cn/","example":"MIRT000002","example_extras":[],"deprecated":true,"mappings":{"biocontext":"MIRTARBASE","integbio":"nbdc01217","miriam":"mirtarbase","n2t":"mirtarbase","pathguide":"715","wikidata":"P2646"},"synonyms":[],"keywords":["genome/gene","image/movie","interaction/pathway","rna","sequence"],"references":["https://github.com/biopragmatics/bioregistry/pull/940"],"publications":[{"pubmed":"34850920","doi":"10.1093/nar/gkab1079","pmc":"PMC8728135","title":"miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions","year":2022},{"pubmed":"31647101","doi":"10.1093/nar/gkz896","pmc":"PMC7145596","title":"miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database","year":2020},{"pubmed":"29126174","doi":"10.1093/nar/gkx1067","pmc":"PMC5753222","title":"miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions","year":2018},{"pubmed":"26590260","doi":"10.1093/nar/gkv1258","pmc":"PMC4702890","title":"miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database","year":2016},{"pubmed":"24304892","doi":"10.1093/nar/gkt1266","pmc":"PMC3965058","title":"miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions","year":2014},{"pubmed":"21071411","doi":"10.1093/nar/gkq1107","pmc":"PMC3013699","title":"miRTarBase: a database curates experimentally validated microRNA-target interactions","year":2010}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"preferred_prefix":"mirtarbase"}