The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.
hgnc.symbol
Local identifiers in HGNC gene symbol should match this
regular expression:
^[A-Za-z-0-9_]+(\@)?$
Compact URIs (CURIEs) constructed from HGNC gene symbol should match
this regular expression:
^hgnc\.symbol:[A-Za-z-0-9_]+(\@)?$
A summary of the relations in the Bioregistry schema can be found here.
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
HGNC.SYMBOL
|
|
Identifiers.org | miriam |
hgnc.symbol
|
|
N2T | n2t |
hgnc.symbol
|
|
TogoID | togoid |
HgncSymbol
|
|
Wikidata | wikidata |
P353
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
hgnc.symbol:DAPK1
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
HGNC gene symbol | hgnc.symbol |
https://www.genenames.org/data/gene-symbol-report/#!/symbol/DAPK1 |
Bioregistry | bioregistry |
https://bioregistry.io/hgnc.symbol:DAPK1 |
Identifiers.org | miriam |
https://identifiers.org/hgnc.symbol:DAPK1 |
Name-to-Thing | n2t |
https://n2t.net/hgnc.symbol:DAPK1 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
depmap |
DepMap Gene Summary | https://depmap.org/portal/gene/DAPK1 |
oncomx |
OncoMX | https://oncomx.org/searchview/?gene=DAPK1 |
pathwaycommons |
Pathway Commons Gene Interations | https://apps.pathwaycommons.org/interactions?source=DAPK1 |