The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the hgnc.symbol prefix. For all use cases, you should use hgnc.symbol instead of depod.

Prefix

depod

Keywords

life science

Links

Homepage

Contact

General Enquiries   0000-0003-3562-7869

Pattern for Local Unique Identifiers

Local identifiers in Human Dephosphorylation Database should match this regular expression:
^[A-Z0-9]+$

Example Local Unique Identifier

PTPN1   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Dephosphorylation Database should match this regular expression:
^depod:[A-Z0-9]+$

Example CURIE

depod:PTPN1

Publications

• 2019 The human DEPhOsphorylation Database DEPOD: 2019 update
• 2014 The human DEPhOsphorylation database DEPOD: a 2015 update
• 2013 Elucidating human phosphatase-substrate networks

A summary of the relations in the Bioregistry schema can be found here.

Provides

hgnc.symbol

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 5 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE depod:PTPN1 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.