Registry Human Dephosphorylation Database Provider

The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the hgnc.symbol prefix. For all use cases, you should use hgnc.symbol instead of depod.

Prefix
depod
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Human Dephosphorylation Database should match this regular expression:
^[A-Z0-9]+$

Example Local Unique Identifier
PTPN1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Dephosphorylation Database should match this regular expression:
^depod:[A-Z0-9]+$

Example CURIE
depod:PTPN1
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for depod.

Registry Name Metaprefix External Prefix
Identifiers.org miriam depod
Name-to-Thing n2t depod
Prefix Commons prefixcommons DEPOD
UniProt Cross-ref database uniprot DEPOD
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE depod:PTPN1 is used to demonstrate the provides available for depod. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Human Dephosphorylation Database depod http://www.depod.bioss.uni-freiburg.de/showp.php?gene=PTPN1
Bioregistry bioregistry https://bioregistry.io/depod:PTPN1
Identifiers.org miriam https://identifiers.org/depod:PTPN1
Name-to-Thing n2t https://n2t.net/depod:PTPN1