The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the hgnc.symbol prefix. For all use cases, you should use hgnc.symbol instead of depod.

life science
General Enquiries   0000-0003-3562-7869
Pattern for Local Unique Identifiers

Local identifiers in Human Dephosphorylation Database should match this regular expression:

Example Local Unique Identifier
PTPN1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Dephosphorylation Database should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Metaregistry Human Dephosphorylation Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext DEPOD
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.q9j2e3 logo miriam depod
N2T Name-to-Thing logo n2t depod
Pathguide Pathguide logo pathguide 584
re3data Registry of Research Data Repositories logo re3data r3d100011936
UniProt UniProt Cross-ref database logo uniprot DB-0190

Providers are various services that resolve CURIEs to URLs. The example CURIE depod:PTPN1 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Human Dephosphorylation Database depod
Bioregistry bioregistry miriam
Name-to-Thing n2t