GiardiaDB is one of the databases that can be accessed through the EuPathDB (; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

eukaryotic genome genomics
Omar S. Harb   0000-0003-4446-6200   ramobrah
Pattern for Local Unique Identifiers

Local identifiers in GiardiaDB should match this regular expression:

Example Local Unique Identifier
GL50803_102438   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GiardiaDB should match this regular expression:

Example CURIE
2008 GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
Metaregistry GiardiaDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GIARDIADB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.e7skwg
Integbio Integbio logo integbio nbdc01782 logo miriam giardiadb
N2T Name-to-Thing logo n2t giardiadb
Prefix Commons Prefix Commons logo prefixcommons giardiadb
re3data Registry of Research Data Repositories logo re3data r3d100012458

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GL50803_102438 is used to demonstrate the providers available for GiardiaDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
GiardiaDB giardiadb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF