Registry European Nucleotide Archive
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.
- Prefix
ena.embl- Alternative Prefixes
- ena
- Keywords
- biodiversity bioinformatics data management dna functional genomics genomics metagenomics transcriptomics
- Links
- Homepage @enasequence
- Contact
- Guy Cochrane 0000-0001-7954-7057
- Identifier Space Owner
- European Bioinformatics Institute
- Pattern for Local Unique Identifiers
-
Local identifiers in European Nucleotide Archive should match this regular expression:
^[A-Z]+[0-9]+(\.\d+)?$ - Example Local Unique Identifier
- BN000065 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from European Nucleotide Archive should match this regular expression:
^ena\.embl:[A-Z]+[0-9]+(\.\d+)?$ - Example CURIE
- ena.embl:BN000065
- Publications
-
- 2021 The European Nucleotide Archive in 2020
- 2016 European Nucleotide Archive in 2016
- 2015 The International Nucleotide Sequence Database Collaboration
- 2015 Biocuration of functional annotation at the European nucleotide archive
- 2014 Content discovery and retrieval services at the European Nucleotide Archive
- 2012 Facing growth in the European Nucleotide Archive
- 2004 The EMBL Nucleotide Sequence Database
Ontology
- Canonical For (2)
- bioproject insdc.run
- In Collection
- Global Biodata Coalition - Global Core Biodata Resources
Metaregistry European Nucleotide Archive
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
ENA.EMBL
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.dj8nt8
|
|
GO
|
go |
ENA
|
|
Identifiers.org
|
miriam |
ena.embl
|
|
N2T
|
n2t |
ena.embl
|
|
Prefix Commons
|
prefixcommons |
ena
|
|
re3data
|
re3data |
r3d100010527
|
|
UniProt
|
uniprot |
DB-0022
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:BN000065
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| European Nucleotide Archive | ena.embl |
https://www.ebi.ac.uk/ena/browser/view/BN000065 |
| Bioregistry | bioregistry |
https://bioregistry.io/ena.embl:BN000065 |
| Identifiers.org | miriam |
https://identifiers.org/ena.embl:BN000065 |
| Name-to-Thing | n2t |
https://n2t.net/ena.embl:BN000065 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
ENA through GenBank | https://www.ncbi.nlm.nih.gov/nuccore/BN000065 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/ena:BN000065 |