The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.
cath.superfamily
Local identifiers in CATH superfamily should match this
regular expression:
^\d+(\.\d+(\.\d+(\.\d+)?)?)?$
Compact URIs (CURIEs) constructed from CATH superfamily should match
this regular expression:
^cath\.superfamily:\d+(\.\d+(\.\d+(\.\d+)?)?)?$
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for cath.superfamily
with
1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
CATH.SUPERFAMILY
|
|
Identifiers.org
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miriam |
cath.superfamily
|
|
Name-to-Thing
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n2t |
cath.superfamily
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
cath.superfamily:1.10.10.200
is used to demonstrate the provides available for
cath.superfamily
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
CATH superfamily | cath.superfamily |
http://www.cathdb.info/cathnode/1.10.10.200 |
Bioregistry | bioregistry |
https://bioregistry.io/cath.superfamily:1.10.10.200 |
Identifiers.org | miriam |
https://identifiers.org/cath.superfamily:1.10.10.200 |
Name-to-Thing | n2t |
https://n2t.net/cath.superfamily:1.10.10.200 |