{"prefix":"cath","name":"CATH Protein Structural Domain Superfamily","description":"CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.","pattern":"^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$","uri_format":"http://www.cathdb.info/cathnode/$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/cath:$1"}],"homepage":"http://www.cathdb.info","contact":{"name":"Christine Orengo","orcid":"0000-0002-7141-8936","email":"c.orengo@ucl.ac.uk"},"example":"1.10.8.10","example_extras":[],"deprecated":false,"mappings":{"biocontext":"CATH","edam":"2700","integbio":"nbdc01888","miriam":"cath","n2t":"cath","prefixcommons":"cath","re3data":"r3d100012629"},"synonyms":[],"keywords":["3d structure","classification","protein","sequence","structure"],"publications":[{"pubmed":"9309224","doi":"10.1016/s0969-2126(97)00260-8","title":"CATH--a hierarchic classification of protein domain structures","year":1997},{"pubmed":"39565206","doi":"10.1093/nar/gkae1087","title":"CATH v4.4: major expansion of CATH by experimental and predicted structural data","year":2024},{"pubmed":"33237325","doi":"10.1093/nar/gkaa1079","pmc":"PMC7778904","title":"CATH: increased structural coverage of functional space","year":2021},{"pubmed":"30398663","doi":"10.1093/nar/gky1097","pmc":"PMC6323983","title":"CATH: expanding the horizons of structure-based functional annotations for genome sequences","year":2019},{"pubmed":"29112716","doi":"10.1093/nar/gkx1069","pmc":"PMC5753370","title":"Gene3D: Extensive prediction of globular domains in proteins","year":2018},{"pubmed":"27899584","doi":"10.1093/nar/gkw1098","pmc":"PMC5210570","title":"CATH: an expanded resource to predict protein function through structure and sequence","year":2016},{"pubmed":"27477482","doi":"10.1093/bioinformatics/btw473","pmc":"PMC5018379","title":"Functional classification of CATH superfamilies: a domain-based approach for protein function annotation","year":2016},{"pubmed":"26253692","doi":"10.1016/j.biochi.2015.08.004","pmc":"PMC4678953","title":"The history of the CATH structural classification of protein domains","year":2015},{"pubmed":"25348408","doi":"10.1093/nar/gku947","pmc":"PMC4384018","title":"CATH: comprehensive structural and functional annotations for genome sequences","year":2014},{"pubmed":"11788987","title":"The CATH protein family database: a resource for structural and functional annotation of genomes","year":2002}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"cath"}