ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.
- Prefix
protclustdb- Keywords
- protein structure
- Links
- Homepage
- Publications
- 2008 The National Center for Biotechnology Information's Protein Clusters Database
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in ProtClustDB should match this regular expression:
^\w+$ - Example Local Unique Identifier
- O80725 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from ProtClustDB should match this regular expression:
^protclustdb:\w+$ - Example CURIE
- protclustdb:O80725
Contacts
- Contact
- William Klimke
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
PROTCLUSTDB
|
|
Identifiers.org
|
miriam |
protclustdb
|
|
N2T
|
n2t |
protclustdb
|
|
Prefix Commons
|
prefixcommons |
protclustdb
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier O80725 is used to demonstrate the providers
available for ProtClustDB. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| ProtClustDB | protclustdb |
https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725 |
| Bioregistry | bioregistry |
https://bioregistry.io/protclustdb:O80725 |
| Identifiers.org | miriam |
https://identifiers.org/protclustdb:O80725 |
| Name-to-Thing | n2t |
https://n2t.net/protclustdb:O80725 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/protclustdb:O80725 |