The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.

Prefix
pmap.substratedb
Keywords
domain protein reaction
Links
Homepage
Contact
Alexey M. Eroshkin   0000-0003-2023-4608
Pattern for Local Unique Identifiers

Local identifiers in SubstrateDB should match this regular expression:
^\d+$

Example Local Unique Identifier
1915   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from SubstrateDB should match this regular expression:
^pmap\.substratedb:\d+$

Example CURIE
pmap.substratedb:1915
Publications
2008 PMAP: databases for analyzing proteolytic events and pathways
Metaregistry SubstrateDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PMAP.SUBSTRATEDB
Identifiers.org Identifiers.org logo miriam pmap.substratedb
N2T Name-to-Thing logo n2t pmap.substratedb
Prefix Commons Prefix Commons logo prefixcommons pmap.substratedb
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1915 is used to demonstrate the providers available for SubstrateDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
SubstrateDB pmap.substratedb http://substrate.burnham.org/protein/annotation/1915/html
Bioregistry bioregistry https://bioregistry.io/pmap.substratedb:1915
Identifiers.org miriam https://identifiers.org/pmap.substratedb:1915
Name-to-Thing n2t https://n2t.net/pmap.substratedb:1915
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pmap.substratedb:1915