The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.
- Prefix
pmap.substratedb- Keywords
- domain protein reaction
- Links
- Homepage
- Publications
- 2008 PMAP: databases for analyzing proteolytic events and pathways
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in SubstrateDB should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 1915 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from SubstrateDB should match this regular expression:
^pmap\.substratedb:\d+$ - Example CURIE
- pmap.substratedb:1915
Contacts
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
PMAP.SUBSTRATEDB
|
|
Identifiers.org
|
miriam |
pmap.substratedb
|
|
N2T
|
n2t |
pmap.substratedb
|
|
Prefix Commons
|
prefixcommons |
pmap.substratedb
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1915 is used to demonstrate the providers
available for SubstrateDB. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| SubstrateDB | pmap.substratedb |
http://substrate.burnham.org/protein/annotation/1915/html |
| Bioregistry | bioregistry |
https://bioregistry.io/pmap.substratedb:1915 |
| Identifiers.org | miriam |
https://identifiers.org/pmap.substratedb:1915 |
| Name-to-Thing | n2t |
https://n2t.net/pmap.substratedb:1915 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/pmap.substratedb:1915 |