The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.
pmap.substratedb
Local identifiers in SubstrateDB should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from SubstrateDB should match
this regular expression:
^pmap\.substratedb:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PMAP.SUBSTRATEDB
|
|
Identifiers.org | miriam |
pmap.substratedb
|
|
N2T | n2t |
pmap.substratedb
|
|
Prefix Commons | prefixcommons |
pmap.substratedb
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1915
is used to demonstrate the providers
available for SubstrateDB. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
SubstrateDB | pmap.substratedb |
http://substrate.burnham.org/protein/annotation/1915/html |
Bioregistry | bioregistry |
https://bioregistry.io/pmap.substratedb:1915 |
Identifiers.org | miriam |
https://identifiers.org/pmap.substratedb:1915 |
Name-to-Thing | n2t |
https://n2t.net/pmap.substratedb:1915 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/pmap.substratedb:1915 |