The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.

Prefix

mmdb

Keywords

dna interaction protein small molecule structure

Links

Homepage

Publications

2006 MMDB: annotating protein sequences with Entrez's 3D-structure database

Pattern for Local Unique Identifiers

Local identifiers in Molecular Modeling Database should match this regular expression:
^\d{1,5}$

Example Local Unique Identifier

50885   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Molecular Modeling Database should match this regular expression:
^mmdb:\d{1,5}$

Example CURIE

mmdb:50885

Contact

Siqian He   0000-0002-1707-4167

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 50885 is used to demonstrate the providers available for Molecular Modeling Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.